Proton is known as the "scariest and cruelest guy in Team Rocket", and is quick to anger. He shows no remorse in cutting off the tails of Slowpoke down in the Slowpoke Well, and is frustrated when he is beaten by the player and is forced to retreat. He is also cocky, bragging about Rocket's efforts and advising the player not to interfere with their work, lest they face the wrath of the organization. Despite his traits, he's one of the most popular executives; a Rocket Grunt in the Goldenrod Radio Tower, when spoken to, admits her admiration for him. He is the third in command of the Team Rocket executives. He is one of the members of Team Rocket in Johto. His father is unknown like some of the other Team Rocket members. He does not appear in person often but is good at getting new agents/grunts. He has teal hair and mostly relates to the champion Lance. He enjoys giving orders to other members.

Archer is a young man with fair skin, spikey aquamarine hair, and teal eyes. He wears a long white sleeve shirt with a black undershirt and the Team Rocket emblem printed near his right sleeve. He also wears a black belt, white pants, and white shoes. Ambitious, cunning with great leadership skills. Archer does a decent job in taking over Giovanni's role as Director. At one point, he even disguises himself as his former superior to throw-off the protagonist. In battle, Archer is formidable and shouldn't be underestimated as he possesses some fairly powerful Pokémon.

Ariana is a beautiful young woman with fair skin, scarlet red hair that goes to her shoulders, and matching red eyes. Her uniform consists of a black shirt, with a white leather, long sleeve jacket over it. A small black patch on the left side of the jacket bearing team rocket's symbol, along with a long white skirt with a slit on the right side for style. On her waist, a black belt with a silver belt buckle. On her feet, a pair of white, knee high, high heeled leather boots. To accessorize, she use pink lipstick with matching pink nail polish, and is always seen wearing a pair of large golden, triangular shaped earrings. As seen by her appearance, posture, and expression, it is known that Ariana is a very vain, and intelligent woman. She shows this often with her rank and status in Team Rocket, and in battle against trainers, and the player character.

Gold grew up in a home full of baby Pokémon. His neighbors in New Bark Town refer to his family as the "Poké House". He usually wears a pair of goggles and travels on a scooter. Instead of throwing/kicking his Poké Balls, he uses a billiard cue to shoot them out, allowing for tactical maneuvers and deployments of his Pokémon. Gold's hobbies include gambling, skateboarding, and trying foods from different cities. His favorite idol/DJ is DJ Mary from the Goldenrod Radio Station. Gold is even more reckless and stubborn than Red. He likes playing billiards, but sometimes he may use his Pokémon to cheat. Gold's mother has described him as "careless". Gold also tends to lie or exaggerate at times, in a bid to make himself seem more impressive, and other people around him notice it. He also seems to exhibit a one-track mind at times, being an ardent fan of pretty girls like DJ Mary, Jasmine and the Kimono Girls, but failing to recognize Morty or the Johto Elite Four.